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First published January 9, 2007 as JAMIA PrePrint; doi:10.1197/jamia.M1953
Journal of the American Medical Informatics Association 2007;14(2):164-174
© 2007 American Medical Informatics Association


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Submitted on August 31, 2005
Accepted on December 11, 2006

A Comparative Evaluation of Full-text, Concept-based, and Context-Sensitive Search

Robert Moskovitch1*, Susana B. Martins MD, MSc2, Eytan Behiri MD3, Aviram Weiss4, and Yuval Shahar MD, PhD1

Affiliation of the authors: 1 Medical Informatics Research Center, Department of information Systems Engineering, Ben Gurion University, Beer Sheva, Israel ; 2 Stanford University, Palo Alto, CA, USA; VA Palo Alto Heath Care Center, Palo Alto, CA, USA ; 3 E&C Medical Intelligence, Inc., New York, NY, USA; 4 Medical Corps, Israel

* To whom correspondence should be addressed.

Objective Study comparatively (1) concept-based search, using documents pre-indexed by a conceptual hierarchy; (2) context-sensitive search, using structured, labeled documents; and (3) traditional full-text search. Hypotheses were: (1) more contexts lead to better retrieval ac-curacy, and (2) adding concept-based search to the other searches would improve upon their baseline performances.

Design Use our Vaidurya architecture, for search and retrieval evaluation, of structured documents classified by a conceptual hierarchy, on a clinical guidelines test collection.

Measurements Precision computed at different levels of recall to assess the contribution of the retrieval methods. Comparisons of precisions done with recall set at 0.5, using t-tests.

Results Performance increased monotonically with the number of query context elements. Using context-sensitive terms, mean improvement was 11.1% at recall 0.5. With three contexts, mean query precision was 42% 17% (95% confidence interval (CI), 31% to 53%); with two contexts, 32% 13% (95% CI 27% to 38%); and one context, 20% 9% (95% CI, [15% to 24%). Adding context-based queries to full-text queries monotonically improved precision beyond the 0.4 level of recall. Mean improvement was 4.5% at recall 0.5. Adding concept-based search to full-text search improved precision to 19.4% at recall 0.5.

Conclusions The study demonstrated usefulness of concept-based and context-sensitive queries for enhancing the precision of retrieval from a digital library of semi-structured clinical guideline documents. Concept-based searches outperformed free-text queries, especially when baseline precision was low. In general, the more ontological elements used in the query, the greater the resulting precision.







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